| Name | Version | Summary | date |
| cogent3 |
2025.7.10a10 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-08-29 06:33:51 |
| cogent3-h5seqs |
0.6.0 |
HDF5 storage driver for cogent3 sequence collections |
2025-08-28 22:39:51 |
| phylim |
2025.8.27 |
A library for checking the limits of phylogenetic tree estimation. |
2025-08-27 06:25:34 |
| mdeq |
2025.6.30 |
mdeq: mutation disequilibrium analysis tools. |
2025-08-13 07:11:57 |
| sc-supertree |
2025.7.31 |
Spectral Cluster Supertree. |
2025-07-31 04:14:53 |
| mach2 |
1.0.0 |
Migration Analysis of Clonal History 2 |
2025-02-25 16:39:53 |
| treesumstats |
0.4 |
Encoding phylogenetic trees with summary statistics. |
2025-02-20 16:11:01 |
| diverse-seq |
2024.12.26a1 |
diverse_seq: a tool for sampling diverse biological sequences |
2024-12-26 03:33:53 |
| SuchTree |
1.2 |
A python library for doing fast, thread-safe computations on phylogenetic trees |
2024-11-20 09:07:45 |
| phylodeep |
0.9 |
Phylodynamic paramater and model inference using pretrained deep neural networks. |
2024-09-20 14:44:52 |
| pastml |
1.9.49 |
Ancestral character reconstruction and visualisation for rooted phylogenetic trees. |
2024-09-18 16:02:44 |
| cogent3-ete3 |
2024.8.22a6 |
cogent3 plugin for ete3 |
2024-09-17 06:36:17 |
| TreeProfiler |
1.2.3 |
TreeProfiler is command-line tool for profiling metadata table into phylogenetic tree with descriptive analysis and output visualization |
2024-08-26 10:28:42 |
| treetop |
2024.5.13.dev1 |
TreeTOP |
2024-05-13 02:35:42 |
| sequana-laa |
0.10.0 |
Long read amplicon analysis |
2023-05-25 10:15:39 |